Index

A

add_data() (msbuddy.Msbuddy method) add_formula_str() built-in function adduct (msbuddy.base.MetaFeature attribute)

annotate_formula() (msbuddy.Msbuddy method) array (msbuddy.base.Formula attribute) assign_subformula() built-in function

B

built-in function add_formula_str() assign_subformula() enumerate_subform_arr() form_arr_to_str() load_mgf() load_usi() mass_to_formula() mz_to_formula() read_formula() read_formula_str()

C

candidate_formula_list (msbuddy.base.MetaFeature attribute) charge (msbuddy.base.Adduct attribute) (msbuddy.base.Formula attribute) (msbuddy.base.MetaFeature attribute)

charged_formula (msbuddy.base.CandidateFormula attribute) clear_data() (msbuddy.Msbuddy method) config (msbuddy.Msbuddy attribute)

D

data (msbuddy.Msbuddy attribute)

db_loaded (msbuddy.Msbuddy attribute) dbe (msbuddy.base.Formula attribute)

E

enumerate_subform_arr() built-in function

estimated_fdr (msbuddy.base.CandidateFormula attribute) estimated_prob (msbuddy.base.CandidateFormula attribute) explanation_list (msbuddy.base.MS2Explanation attribute)

F

form_arr_to_str() built-in function

formula (msbuddy.base.CandidateFormula attribute) (msbuddy.utils.FormulaResult attribute)

G

get_summary() (msbuddy.Msbuddy method)

I

identifier (msbuddy.base.MetaFeature attribute) idx (msbuddy.utils.SubformulaResult attribute) idx_array (msbuddy.base.MS2Explanation attribute) (msbuddy.base.ProcessedMS1 attribute) (msbuddy.base.ProcessedMS2 attribute)

int_array (msbuddy.base.ProcessedMS1 attribute) (msbuddy.base.ProcessedMS2 attribute) (msbuddy.base.Spectrum attribute) isotope (msbuddy.base.Formula attribute)

L

load_mgf() built-in function load_mgf() (msbuddy.Msbuddy method)

load_usi() built-in function load_usi() (msbuddy.Msbuddy method)

M

m (msbuddy.base.Adduct attribute) mass (msbuddy.base.Formula attribute) mass_error (msbuddy.utils.FormulaResult attribute) mass_error_ppm (msbuddy.utils.FormulaResult attribute) mass_to_formula() built-in function ms1_isotope_similarity (msbuddy.base.CandidateFormula attribute) ms1_processed (msbuddy.base.MetaFeature attribute) ms1_raw (msbuddy.base.MetaFeature attribute) ms2_processed (msbuddy.base.MetaFeature attribute) ms2_raw (msbuddy.base.MetaFeature attribute) ms2_raw_explanation (msbuddy.base.CandidateFormula attribute) msbuddy.base.Adduct (built-in class) msbuddy.base.CandidateFormula (built-in class) msbuddy.base.Formula (built-in class) msbuddy.base.MetaFeature (built-in class)

msbuddy.base.MS2Explanation (built-in class) msbuddy.base.ProcessedMS1 (built-in class) msbuddy.base.ProcessedMS2 (built-in class) msbuddy.base.Spectrum (built-in class) msbuddy.Msbuddy (built-in class) msbuddy.MsbuddyConfig (built-in class) msbuddy.utils.FormulaResult (built-in class) msbuddy.utils.SubformulaResult (built-in class) mz (msbuddy.base.MetaFeature attribute) mz_array (msbuddy.base.ProcessedMS1 attribute) (msbuddy.base.ProcessedMS2 attribute) (msbuddy.base.Spectrum attribute) mz_to_formula() built-in function mz_tol (msbuddy.base.ProcessedMS1 attribute) (msbuddy.base.ProcessedMS2 attribute)

N

net_formula (msbuddy.base.Adduct attribute)

normalize_intensity() (msbuddy.base.ProcessedMS2 method) normed_estimated_prob (msbuddy.base.CandidateFormula attribute)

P

pos_mode (msbuddy.base.Adduct attribute)

ppm (msbuddy.base.ProcessedMS1 attribute) (msbuddy.base.ProcessedMS2 attribute)

R

read_formula() built-in function

read_formula_str() built-in function rt (msbuddy.base.MetaFeature attribute)

S

string (msbuddy.base.Adduct attribute)

subform_list (msbuddy.utils.SubformulaResult attribute)

U

update_config() (msbuddy.Msbuddy method)